Promoter Analysis

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  • If there are two or more promoters for scanning, please use Multiple promoter analysis.
  • If you want to use matrices from ChIP-seq dataset for scanning, please use Promoter analysis in PCBase.

    • Step 1

    Please input sequence name and the promoter sequence in FASTA format.

    Step 2

    Please specify TF binding motifs:

    Please select transcription factors from the following species:


    Input custom motif sequence (max=10, separate by line feed) with IUPAC code and group with "[]" (EX: [GC]SS[GC]GC);


    Step 3

    Please select the optional promoter elements: