Cross Species

  • CNS analysis: Identification of conserved non-coding sequences (CNSs) among homologous genes and combinational and sequences variants of TFBSs in CNSs.
  • Search similar gene: Identification of conserved TFBSs in promoters between an input gene and its’ similar gene.
  • Blast2SEQ Search: Identification of conserved TFBSs in two user-customized promoters.
  • Please select a function of interest:

    • Step1

      Please select the species and enter Gene ID

    Input


    • Species:

    • Gene ID or Keyword:


       

    Step2

      Please specify the promoter region


    Step3

      Set parameters
  • Please enter identity and cut-off of blastn

    • identity ≥ 
    e-values <  

  • Please enter minimum length of conserved non-coding region

    • length  ≥  nt

  • Please enter minimum numbers of homologous species





    • Step1

      Please select the species and enter Gene ID

    Input


    • Species:

    • Gene ID:

    Similar gene


    • Species:

    Step2

      Please specify the promoter region







    Align two promoter sequences using BLAST (bl2seq)

    Step1

      Please input a pair of promoter sequences in FASTA format

    1st Promoter Sequence

    2nd Promoter Sequence

    Step2

      Please select the species (matrix/motif sequence)