PlantPAN 3.0
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PlantPAN 2.0
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Multiple promoter analysis
Note
Posted sequences
Uploaded sequences
Format
Fasta
Fasta(file extension name: .txt, .fa, .fasta)
Number of Maximum bases
20 kb
600 kb
execution time (estimation)
within 1 minute
‡
1 minute ~ 1 hour
‡
‡
: Execution time depends on your data size.
Step 1
Please input promoter sequences (FASTA format)
>Micpu_test001 GGAGCCGAAGGGGATGATCGGGGACTCGCCGCCGCCCGGGTAGGTGCCGAACTCCGGGTAGATGTCCGCCTTGACGACGGTGGACACGGACTTGGCCTGGAACAGCGCAGGGAGAGAGAGAGGGGGGCGGACGGTCAGTTTCTGATTCCGTATCGTATCTCGAGTATCGCGGAACTCCGGAGTAGATCGCGCGACGAAAACCGCGCGCGACGCCGCGCGCGCGATGGAAAAGAGCCGCGACGACCGCGAGAAGGATGCATCATCGCTCAATGCGCATGATTTTTCCGTTTCGCGCTCGTCGCGCCCGCGCGCGCGTCGCGATCCCTCGCGAACGCGCGCGCGTGAACTTCTCGCGCGATCGCGTTTGGGTTCCCGCGAATCCGCGCGGAAAAAACACCGGAGAAGCGCGCGCACGCACCGTGACCTTGGTCGCCTTGAGAGCCGCGACGGAGCCGGTGAAGGAGGAGGCAATGCAGGCCATATTTAAAGTTTTGTTATGTGATGTGAAGTGTGGGTGTGTGTGCTGGAATGGCGTCCGCGGCGACGTCGCAGCGCTTTTCATATCTCGACGCAGTGCGTTTCGATGATTTTTAACGCCCTGTGAGTCGCTCGCTGGCGATCGAATCTGAATGTGGATCTCACGAACTGAACCGGCCGATTCCAGTCGCGATACGGGCGAATGAAACGGGCTCTGCGCGATCGCGAGTGGTCGTCCGACCGCGCATATGGGCAATCAGTTCGAAATTGAGCGTTGAAGCACTACGCCAGGTTGGCACTAGTGTATTTTTGTTTCGGATGTCAGTACGGGATGTCGTAGTACGCCGCGCGACGCGAATCCGTACGAGAGTCAGTCACGCGAGATGCGATCGAATCTGGCCTCGGTGTCGGGAACGAGCCAATGAGATGAGCGTTTTTCGATTTTCCCGGCGGGATCCACTGGCCGTTGTCAGCGTTTGGCCGCGACTTAACCCCTCGCGATTCCGCGCGGACGCCATTCCTG >Micpu_test002 TCTCCGGAAAAAAACGCTTCGTCGTCGTCGTGGTCGCCGTCGACGTCATCTTCGGCGTGCCGCGCGCCCGACGCTTCGAGCGCCGCGACGGCGGCGCGTCGCGACGTCGCCAGCGCCCTCGCCGCTTTCGCGACGACCTCGTCGTCTAGATCGCCGAGGTCGCCGCCGCCGCCTTCCCGCTCCTCCTCCTCCTCCTCCTCCTCCCCCCCCCCCCTCTCCCTCTCCCACGCGTACGCGTCGACCGCGTTCGGCGCGATCGCCGGTGGCCAGCGCCGCGCCTTCGCCGCGCCGGCGATCAACGCGCGCGACGCGACGCCGCGGACGACGCGCGCCGCGGCGACGACGCGAACGCTGATCGCGCGCGCGAACCGGCGGTACGCGCTCGCGTCGTGAGCGACGGACGCGGACGCGGACGCGAGCGCGCTCGTCGCGACGCGCAGCGCGGCCGCGCACGCCTCCGCGCGCTCCAGCTGGGAGAGAAGCGCGGAGGTGTTCGACGCGTCCGACGACGATCTCTGACGCGAATCGTCCCGCAGCGACGACGCGAGTCGCGTCGCCTCGCGCGTCGCGCCCTCCGCGCGCGCGTGCTCGCGAAGCGCGTCGGAGACGTCGCGCATCGCGCGCAGCCGCGCGACGAGCGACTCGACGTCGTCGCCGTTCGTCGCGCCGTCGCGCGCGATATCGGCCTCGCCGTCGCCGACGCCGACGCCCGCGCGCGTCGCGTCGTCGTCCGCGGTCGCGGCCGCGGACTCGAGGAGGGCGCGGAGGGTGGTCCTCGTCGACGTCGCGTCGCGGAGCGCGGTTGCGAGCGACGCCTCCGCGTCCTTCGCGGCGGCGAGAGCGCGCGACGCGGACGCCGCGGCCGCGGCCGCGGGCGCCGCGGTGGTTCGCATGCGCGCCGCGCTCTGCCGGCGCGGGGCGCGGACGGTCCGAGGCGAACGAATTCAGCATTCACAGTTCGGCGGGCGCGGGTGCCAGCTCATCATCATCATCACAACTC >Micpu_test003 AAGGAGAAAACGTCGAAGGATGCCATCCTTTCGAGTTTTCGCCCATCGTCGCGCGCGAATTCGATCGCGCGCGGCCGCGACGCCGCCGATCTCTCGCGCGGCGTCGCGGAACGCAAGAATCGTGAAGAATTAAGCCGGGACGGGAACGCACTTGTTGTTCGTCGGGTTCCAGACCTGCATCGCGGAGGACTTGGAGGCCTTGCCGGTGGAGACGGCGGGGACCTTGGCCACGACGGGCGCGACGGAGCAGAGAGCAGCCATTTTAATGTGTGAAGTGTGGTGGACTTCCGACGGGTGCGGATATGTGAGGGCGCAGATGTCTTCGAGGCGGCTATTTGTGCTGGAATCCACGTGATTTGGATAATTCGCGGCGCGTGATTCGTCGAGAGCCCCACGCAGGGAGTGACGCAGAGCGCGTCTCGGTTCCGACCTGGCGCGCGCGGTTGAAAAATCGCGAAACTTCCTCCGCGATGATGCAATTTCATTGGTCGAGCGCGTCGATTTGAGATGTAGACAAATGAAATCGCATTATTCTGTACGAAACTAAAACCCCGGCGGTCGATTAATTTTCGTCCCGCACACGCCTCCCGCGCCCCCGAGTCAATCTGCGCCGCTTCTCGGGGATCGCCATTCGTGGCACAGGATTCACGAGAAAATGTGAGACTAATTGCGCGTACGGAGTGCCGGTCGTTTTGTACGCGTACGGGCTACGACGTTTCAGACTGTTTGCCGGGCCGCGAAACGACATACGAAAGACTTCATTTTGACCCCCGCGCGCGGGATTTGAAAGGCAGCGGCCGGGGTGAAACGCGCGTCGTTCAAACCACCGCGACCGCGATTTCGCGGTGAAGCGAGCCACAGACCGGTCGACGCGCGAGACGGAAGTAACAACCGACCCCTCCGCACAGCGCAAATAGTCTGCTTGCGGTGGAGAGGCATCTTTCGATAAGACGAGAAGTATAAAGCCACGAGTGTTCGAGAGGAAGGCGTCATTACCGCA >Micpu_test004 AGACGGCGCGCGTCGCGCGAGCGCGGTCGGTATCGCGGGGACAGGCGCGATCGGACGGATGGATCGACGACGAGACGAAGACGACGACGGAAGACGAAGACGCGCCTTGTACTGCAACCCCATGGCGACGCGGACGAGCGCGTAGAGCTGCTGCGCCTGCAGCTGCGTGATGTGCGAGCAAATCTGGAGCTCGTCCACGATGTCGTACATCGTGCCCTCGTACGACCGCTCGCCGAATCCGAACGCGCGCGCGAGCCTTTTGTACCATTTATTCGAAACGGGCGCGGTGAACTTGGGGTCGTTCCAACCACGTTCAAAGCGACGTCGGGGCGGAGTCGAAAGGCGTCAGACGGAGTCGAAAGCGGGGATTGACACCGTGGTGAGAGCGGAGAGATGCGACGGAAGAGAAAGTCCTTAAGGACTGAAGTTCACGACGCGGACGGGGTCGTATGGGGACCAGTGTATAGCTGGATGACTGACGCGCCTCGTACGCGTCGTCCCACGACACGCCGAAGCAGCACACGGACGCCTTCGCGGGGAGGTCGTGGCGGTTCGGCTCGCGCTTGATCTCGATCCTGTGCGCGCCGCCCTGCTCGTATCCTCTCTGCTTGTAGTTCGGCGCCGCGTTCTTCGGCTTCGTCGGCGTCGGCGACACCGCGGACATCGCGGCGAGCGAATCGATTGATTTTAACGAGAATTCGATCACGACGGAACCGAGCGCTCGCGGCGTTCGTCGCCGCCCGTCGGCGGCGCGGCGTTCGTTCGTCGCGCGCGCGCGCGCGAAAGGAACGATACGCGTCCGCGAGCGATGCTCGTGGGCGCCGCGCGCGCGGGTCTCCGACCTCGGGGTGAGATCGTTTCCGATTTGGTCGTCACGGAATGTGGCGCGGGCAGTCTGATGAGTCACTGATCCGAACCGGTTTTGCATTTCTTTCAGACTAAAAAACCTGTAAAAGACCGCGCCCGGACACGCGATAAACGTCAAGAGGGCCGCGATCAA >Micpu_test005 CGCAAATAGCGGACGTCATCTTTGTACCTCGGGATCTCCTGGAGCTCTCGCGTGCATCGCTCCAGGAGTGGCAGCACCTCCGTCTCGCGTCCTCCCGCGGTGAACGTCTGCTCCGTCCACTTGATGAACCTGTCAACGCGCGACGACGCGGGGAAATGTCAGAAAAAAGCGCAGCGGGGGGAGGAAGACGCGAGATCGCGAGTAAATGCCACGGGGACGAGCGCCGCGCGCGCGGTCGCGCGTTCTCACCTGACCCACACGGACAGAGGATCGTCGCCCTCGTACTTCGCGATCGCGTTCCAGAACTCGCTGCGGGATGGTGGTCGGATGGAAGGGACGAGACGGTCAGTTTCGCGCGTCAGGACGCGGTGAGTCACCGACCAAGATTTGGTTCGCGGGGACCGTCGTCCGCGACGCGCTCGCGCGCACCTTCGCTCGTCCTGAATCTTCGCCGCGCGCTCGCTCTGTTTCATATTCGCCGCCTCTTCCATCATCCTTGGGTCCCGGCCCCGTCTCAGGGGCTGGAAGTTCTCCTTCGTCGTGTACCACGTCGGGTCCGCCATCGCCGATGCGGTTTGGCAAAACTCCGAGCGAATGAACGAATGCTCCGTCGCGAGATCGTTCGGCCGTCCGCTTCGGCCGGCGCGCGTCGTCGCTTCGCGAGCGCGCGAGAGAAGAGCGTCTTCTTACCGCGATACGTCACGGACGCGCGATGCGCCTCGCCGGCGTGCGGGTGACGGCGCGCGCGTTCGTTTGCCGCGCGCGTCGCCGGGGGAACAACCGGAAGCGAAAAGCGCGAGCGGAGGCGTTTCGATTTTTCGTCTCGTCGCGGACGAAAAAAGAAGGCGCGCCGCGCGCTGACGACGCTTCTATGCCGCGACGTGATTGGTCGACGCCTGCCTGTGTGGCAACTTTTGGGTGAGGCACAACGTTCGTCTCATCAGGCGGGTTTTCTCGCTCGCGATCCCGGCCCGGACCCCATTCACTCGCACCCGGAACC
Or upload the file
Step 2
Please specify TF binding motifs
PlantPAN 3.0 database
Please select transcription factors from the following species:
All species
Choose species
Arabidopsis thaliana
Brachypodium distachyon
Chlamydomonas reinhardtii
Glycine max
Malus domestica
Oryza sativa
Populus trichocarpa
Sorghum bicolor
Volvox carteri
Zea mays
User-customized motifs
Input custom motif sequence with IUPAC code and group with "[]" (EX: [GC]SS[GC]GC)(max=100)
NAWWWAN RTWWWTR ACGT A[CA][CGT]G[AT][TCA]T TATATAT RTWSSB RYSWKMBDHVN
Step 3
Type Email
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