PlantPAN 4.0
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ChIP-seq Search
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TF Blast Search
Step 1
Please input sequence name and the protein/nucleotide sequence in FASTA format.
>protein_sequence TAYQSELGGDSSPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENERNNPSISLMPGGSNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQDQTALQLV
Step 2
Set parameters:
Input Sequence type
protein (blastp: Protein to Protein database)
nucleotide (blastx: Nucleotide to Protein database)
Input the threshold for analysis
Expectation value (E-value):
(e.g., 0.001, 1e-3, 1E-3)
Select a specific species/family of results
Species:
All species
Antirrhinum majus
(7)
Arabidopsis lyrata
(638)
Arabidopsis thaliana
(1355)
Aureococcus anophagefferens
(1)
Brachypodium distachyon
(515)
Brassica napus
(1)
Cannabis sativa
(356)
Chlamydomonas reinhardtii
(6)
Chlorella sp. NC64A
(6)
Chlorella vulgaris
(7)
Coccomyxa sp. C-169
(7)
Coix lacryma-jobi
(1)
Cucumis sativus
(551)
Cucurbita maxima
(1)
Emiliania huxleyi
(2)
Fragilariopsis cylindrus
(2)
Glycine max
(1339)
Helianthus annuus
(3)
Hemiselmis andersenii
(1)
Hordeum vulgare
(4)
Lotus japonicus
(431)
Malus domestica
(960)
Manihot esculenta
(873)
Medicago truncatula
(435)
Micromonas pusilla
(14)
Mimulus guttatus
(576)
Nicotiana tabacum
(10)
Oryza sativa
(857)
Oryza sativa subsp. indica
(574)
Ostreococcus lucimarinus
(19)
Ostreococcus sp. RCC809
(18)
Ostreococcus tauri
(30)
Petroselinum crispum
(5)
Petunia hybrida
(2)
Phaeodactylum tricornutum
(2)
Phoenix dactylifera
(169)
Physcomitrella patens
(353)
Pisum sativum
(5)
Populus trichocarpa
(843)
Prunus persica
(499)
Ricinus communis
(439)
Selaginella moellendorffii
(173)
Solanum lycopersicum
(1)
Sorghum bicolor
(584)
Spinacia oleracea
(1)
Thalassiosira pseudonana
(3)
Triticum aestivum
(4)
Vicia faba
(1)
Vitis vinifera
(467)
Volvox carteri
(7)
Zea mays
(2342)
TF Family:
All Family
Alpha-amylase (4)
AP2 (2304)
ARF (78)
ARID (5)
ARR-B (19)
AT-Hook (121)
Aux/IAA (1)
B3 (409)
BBR-BPC (15)
BES1 (22)
Bet_v_1 (2)
bHLH (1495)
bZIP (1050)
C2C2COlike (2)
C2H2 (554)
C3H (6)
C3H Zinc finger (140)
CAMTA (14)
CG-1 (44)
CO-like (31)
CPP (19)
CSD (9)
Cupin_1 (1)
DBB (20)
Dehydrin (1)
Dof (101)
E2F (42)
E2F/DP (27)
EIL (15)
EIN3 (107)
ERF (329)
FAR1 (37)
G2-like (83)
GATA (483)
GeBP (23)
GRAS (139)
GRF (34)
HB-other (26)
HB-PHD (6)
HD-ZIP (252)
Homeodomain (1055)
HSF (74)
LBD (75)
LEA type 1 (1)
LEA_5 (1)
LFY (5)
LIM (2)
LOB (138)
LSD (14)
Lyase_aromatic (2)
M-type (46)
MADF (51)
MADS box (714)
MIKC (101)
mTERF (1)
MYB (237)
MYB-related (170)
Myb/SANT (1242)
NAC (974)
NAM (808)
NF-X1 (6)
NF-YA (25)
NF-YB (33)
NF-YC (24)
Nin-like (30)
PLATZ (1)
PsaH (1)
RAV (9)
Ribosomal protein L21P (1)
S1Fa-like (7)
SAP (1)
SBP (384)
Sox (24)
SRS (17)
STAT (1)
Storekeeper (13)
TALE (60)
TBP (58)
TCP (497)
TCR (55)
tify (1)
Trihelix (59)
trp (4)
Tryp_alpha_amyl (1)
VOZ (8)
Whirly (5)
WOX (39)
WRC (1)
WRKY (1733)
YABBY (25)
ZF-HD (48)
(Others) (44)