Guide - Gene Search


Gene Search | TF/TFBS Search | Gene Group Analysis | Promoter Analysis | Cross Species




1. Identification of cis- and trans-elements of input gene.
2. Construction of gene regulatory networks by using coexpression analysis.
3. Visualization of experimental regulatory factor binding sites in JBrowse.












Guide - TF/TFBS Search


Gene Search | TF/TFBS Search | Gene Group Analysis | Promoter Analysis | Cross Species




Access TF/TFBS information by ID, matrix, and keyword search (or browse by TF family and species)














Guide - Gene Group Analysis


Gene Search | TF/TFBS Search | Gene Group Analysis | Promoter Analysis | Cross Species




1. Determine co-occurrence TF and their binding sites within the promoters of input gene group.
2. Regulatory network construction of co-occurrence TFs based on protein-protein interaction.










Guide - Promoter Analysis


Gene Search | TF/TFBS Search | Gene Group Analysis | Promoter Analysis | Cross Species




TFBS scanning in the promoter sequence.






Guide - Cross Species


Gene Search | TF/TFBS Search | Gene Group Analysis | Promoter Analysis | Cross Species




1. Identification of conserved TFBSs in homologous (orthologous and paralogous) promoters or user-customized promoter pairs.
2. Construction of gene regulatory networks using homologous TFs.